wtf-2022-rsc

https://rstats-wtf.github.io/wtf-2022-rsc/

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Project maintained by rstats-wtf Hosted on GitHub Pages — Theme by mattgraham

Day 1, Sessions 1 & 2

Agenda

• Admin & greetings
• Project-oriented workflow, part 1 of 2
• Project-oriented workflow, part 2 of 2

Who: Shannon Pileggi

Slides

• wtf-opening.pdf

• project-oriented-workflow

  • view slides in your web browser: https://rstats-wtf.github.io/wtf-project-oriented-workflow-slides/
  • note: same PDF is used for sessions 1 and 2

Activity prompts

• What’s your OS?
• use_course("rstats-wtf/wtf-explore-libraries")
  • No luck? Get the files in this repo: https://github.com/rstats-wtf/wtf-explore-libraries
• use_course("rstats-wtf/wtf-explore-libraries")
  • No luck? Get the files in this repo: https://github.com/rstats-wtf/wtf-fix-paths
• use_course("rstats-wtf/wtf-packages-report")
  • No luck? Get the files in this repo: https://github.com/wtf-packages-report

Resources

• Wilson G, Bryan J, Cranston K, Kitzes J, Nederbragt L, et al. (2017) Good enough practices in scientific computing. PLOS Computational Biology 13(6): e1005510.
  • https://doi.org/10.1371/journal.pcbi.1005510
  • http://bit.ly/good-enuff
• Trisovic, A., Lau, M.K., Pasquier, T. et al. A large-scale study on research code quality and execution. Sci Data 9, 60 (2022).
  • https://doi.org/10.1038/s41597-022-01143-6
• Saving source and blank slates
• Project-oriented workflow
• Ode to the here package